PUBLISHED WORK
Evolutionary Genetics Laboratory Findings
PUBLICATION IN REVISION
Hypergraphs and centrality measures identifying key features in gene expression data
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Samuel Barton, Zoe C Broad, Daniel Ortiz-Barrientos, Diane Donovan, James G Lefevre
Mathematical Biosciences - 2023
RELEVANT
REVIEW ON SPECIATION
The origins of reproductive isolation in plants
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Eric Baack, Maria Clara Melo, Loren H. Rieseberg, Daniel Ortiz-Barrientos
New Phytologist - 2015
REPLICATED EVOLUTION IN PLANTS
Replicated Evolution in Plants
Maddie E. James, Tim Brodribb, Ian Wriught, Loren H. RIeseberg, and Daniel Ortiz-Barrientos.
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Ann Rev Plant Biology - 2023
LEARN ABOUT SENECIO POSSIBILITIES
List of publications
Daniel's Google Scholar page
Preprints
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Beaman, J., Ortiz-Barrientos, Monro, K., D., Hall, M.D. & White, C.R. Metabolic scaling has diversified among species, despite an evolutionary constraint within species, bioRxiv, https://doi.org/10.1101/2020.05.26.117846.
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James, M.E., Melo, M.C., Roda, F., Bernal-Franco, D.M., Wilkinson, M.J., Liu, H., Walter, G.M., & D. Ortiz-Barrientos. Evidence for mutation-order speciation in an Australian wildflower, bioRxiv, https://doi.org/10.1101/692673.
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Jung, H., Jeon, B J., & D. Ortiz-Barrientos. easyfm : An easy software suite for file manipulation of Next Generation Sequencing data on desktops. bioRxiv, https://doi.org/10.1101/2021.09.29.4622.
Published
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O.Brien, N.V., Holland, B., Engelstaedter,. J., and D. Ortiz-Barrientos. The distribution of fitness effects during adaptive walks using a simple genetic network, PLoS Genetics, May 24, 20024,
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James, M. E., and D. Ortiz-Barrientos, 2024 The genomic consequences of selection across development. Molecular Ecology; 33:e17280.
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Rieseberg, L., E. Warschefsky, D. Ortiz-Barrientos, N. C. Kane, K. Thresher et al., 2023 Editorial 2023. Molecular Ecology 32: 1-25.
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James, M. E., T. Brodribb, I. J. Wright, L. H. Rieseberg and D. Ortiz-Barrientos, 2023 Replicated Evolution in Plants. Annual Review of Plant Biology 74: 697-725.
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James, M. E., R. N. Allsopp, J. S. Groh, A. Kaur, M. J. Wilkinson et al., 2023 Uncovering the genetic architecture of parallel evolution. Molecular Ecology 32: 5575-5589.
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Gao, L. X., M. B. Kantar, D. Moxley, D. Ortiz-Barrientos and L. H. Rieseberg, 2023 Crop adaptation to climate change: An evolutionary perspective. Molecular Plant 16: 1518-1546.
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Barton, S., Z. Broad, D. Ortiz-Barrientos, D. Donovan and J. Lefevre, 2023 Hypergraphs and centrality measures identifying key features in gene expression data. Mathematical Biosciences 366.
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Wilkinson, M. J., R. Yamashita, M. E. James, I. S. E. Bally, N. L. Dillon et al., 2022 The influence of genetic structure on phenotypic diversity in the Australian mango gene pool. Scientific Reports 12.
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Rieseberg, L., E. Warschefsky, B. O'Boyle, P. Taberlet, D. Ortiz-Barrientos et al., 2022 Editorial 2022. Molecular Ecology 31: 1-30.
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Narum, S., J. Kelley, N. Fountain-Jones, R. Hooper, D. Ortiz-Barrientos et al., 2022 Editorial 2022. Molecular Ecology Resources 22: 1-8.
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Ambrose, L., I. Popovic, J. Hereward, D. Ortiz-Barrientos and N. W. Beebe, 2022 Comparisons of chemosensory gene repertoires in human and non-human feeding mosquitoes link olfactory genes to anthropophily. Iscience 25.
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Wilkinson, M. J., F. Roda, G. M. Walter, M. E. James, R. Nipper et al., 2021 Adaptive divergence in shoot gravitropism creates hybrid sterility in an Australian wildflower. Proceedings of the National Academy of Sciences of the United States of America 118.
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Rieseberg, L., E. Warschefsky, B. O'Boyle, P. Taberlet, D. Ortiz-Barrientos et al., 2021 Editorial 2021. Molecular Ecology 30: 1-25.
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Narum, S., J. Kelley, N. Fountain-Jones, R. Hooper, D. Ortiz-Barrientos et al., 2021 Editorial 2021. Molecular Ecology Resources 21: 1-10.
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Marden, E., R. J. Abbott, F. Austerlitz, D. Ortiz-Barrientos, R. S. Baucom et al., 2021 Sharing and reporting benefits from biodiversity research. Molecular Ecology 30: 1103-1107.
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James, M. E., M. J. Wilkinson, D. M. Bernal, H. L. Liu, H. L. North et al., 2021 Phenotypic and genotypic parallel evolution in parapatric ecotypes of. Evolution 75: 3115-3131.
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James, M. E., H. Arenas-Castro, J. S. Groh, S. L. Allen, J. Engelstädter et al., 2021 Highly Replicated Evolution of Parapatric Ecotypes. Molecular Biology and Evolution 38: 4805-4821.
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Cooper, M., O. Powell, K. P. Voss-Fels, C. D. Messina, C. Gho et al., 2021 Modelling selection response in plant-breeding programs using crop models as mechanistic gene-to-phenotype (CGM-G2P) multi-trait link functions. In Silico Plants 3.
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Butlin, R. K., M. R. Servedio, C. M. Smadja, C. Bank, N. H. Barton et al., 2021 Homage to Felsenstein 1981, or why are there so few/many species? Evolution 75: 978-988.
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Ambrose, L., D. Ortiz-Barrientos, R. D. Cooper, N. F. Lobo, T. R. Burkot et al., 2021 Gene flow between island populations of the malaria mosquito, may have contributed to the spread of divergent host preference phenotypes. Evolutionary Applications 14: 2244-2257.
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Walter, G. M., T. J. Richards, M. J. Wilkinson, M. W. Blows, J. D. Aguirre et al., 2020 Loss of ecologically important genetic variation in late generation hybrids reveals links between adaptation and speciation. Evolution Letters 4: 302-316.
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Walter, G. M., R. J. Abbott, A. C. Brennan, J. R. Bridle, M. Chapman et al., 2020 as a model system for integrating studies of genotype, phenotype and fitness. New Phytologist 226: 326-344.
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White, C. R., D. J. Marshall, L. A. Alton, P. A. Arnold, J. E. Beaman et al., 2019 The origin and maintenance of metabolic allometry in animals. Nature Ecology & Evolution 3: 598-603.
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Richards, T. J., D. Ortiz-Barrientos and K. McGuigan, 2019 Natural selection drives leaf divergence in experimental populations of under natural conditions. Ecology and Evolution 9: 6959-6967.
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Bernal, X. E., B. Rojas, M. A. Pinto, A. M. Mendoza-Henao, A. Herrera-Montes et al., 2019 Empowering Latina scientists. Science 363: 825-826.
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Walter, G. M., M. J. Wilkinson, J. D. Aguirre, M. W. Blows and D. Ortiz-Barrientos, 2018 Environmentally induced development costs underlie fitness tradeoffs. Ecology 99: 1391-1401.
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Walter, G. M., J. D. Aguirre, M. W. Blows and D. Ortiz-Barrientos, 2018 Evolution of Genetic Variance during Adaptive Radiation. American Naturalist 191: E108-E128.
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Liew, C. S., A. E. Memory, D. Ortiz-Barrientos, P. J. de Lange and P. B. Pelser, 2018 The delimitation and evolutionary history of the Australasian Lautusoid group of (Asteraceae: Senecioneae). Taxon 67: 130-148.
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Ortiz-Barrientos, D., and M. E. James, 2017 Evolution of recombination rates and the genomic landscape of speciation. Journal of Evolutionary Biology 30: 1519-1521.
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Roda, F., G. M. Walter, R. Nipper and D. Ortiz-Barrientos, 2017 Genomic clustering of adaptive loci during parallel evolution of an Australian wildflower. Molecular Ecology 26: 3687-3699.
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Littleford-Colquhoun, B. L., C. Clemente, M. J. Whiting, D. Ortiz-Barrientos and C. H. Frère, 2017 Archipelagos of the Anthropocene: rapid and extensive differentiation of native terrestrial vertebrates in a single metropolis. Molecular Ecology 26: 2466-2481.
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Reeve, J., D. Ortiz-Barrientos and J. Engelstädter, 2016 The evolution of recombination rates in finite populations during ecological speciation. Proceedings of the Royal Society B-Biological Sciences 283.
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Beekman, M., B. Nieuwenhuis, D. Ortiz-Barrientos and J. P. Evans, 2016 Sexual selection in hermaphrodites, sperm and broadcast spawners, plants and fungi. Philosophical Transactions of the Royal Society B-Biological Sciences 371.
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Richards, T. J., G. M. Walter, K. McGuigan and D. Ortiz-Barrientos, 2016 Divergent natural selection drives the evolution of reproductive isolation in an Australian wildflower. Evolution 70: 1993-2003.
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Walter, G. M., M. J. Wilkinson, M. E. James, T. J. Richards, J. D. Aguirre et al., 2016 Diversification across a heterogeneous landscape. Evolution 70: 1979-1992.
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Richards, T. J., and D. Ortiz-Barrientos, 2016 Immigrant inviability produces a strong barrier to gene flow between parapatric ecotypes of Senecio lautus. Evolution 70: 1239-1248.
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Ortiz-Barrientos, D., J. Engelstädter and L. H. Rieseberg, 2016 Recombination Rate Evolution and the Origin of Species. Trends in Ecology & Evolution 31: 226-236.
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Baack, E., M. C. Melo, L. H. Rieseberg and D. Ortiz-Barrientos, 2015 The origins of reproductive isolation in plants. New Phytologist 207: 968-984.
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Matute, D. R., and D. Ortiz-Barrientos, 2014 Speciation: The Strength of Natural Selection Driving Reinforcement. Current Biology 24: R955-R957.
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Ortiz-Barrientos, D., and E. J. Baack, 2014 Species integrity in trees. Molecular Ecology 23: 4188-4191.
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Melo, M. C., A. Grealy, B. Brittain, G. M. Walter and D. Ortiz-Barrientos, 2014 Strong extrinsic reproductive isolation between parapatric populations of an Australian groundsel. New Phytologist 203: 323-334.
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Elliott, A. G., C. Delay, H. L. Liu, Z. Y. Phua, K. J. Rosengren et al., 2014 Evolutionary Origins of a Bioactive Peptide Buried within Preproalbumin. Plant Cell 26: 981-995.
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Roda, F., H. L. Liu, M. J. Wilkinson, G. M. Walter, M. E. James et al., 2013 Convergence and Divergence during the Adaptation to Similar Environments by an Australian Groundsel. Evolution 67: 2515-2529.
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Roda, F., L. Ambrose, G. M. Walter, H. L. L. Liu, A. Schaul et al., 2013 Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex. Molecular Ecology 22: 2941-2952.
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Ortiz-Barrientos, D., 2013 The Color Genes of Speciation in Plants. Genetics 194: 39-42.
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Sambatti, J. B. M., J. L. Strasburg, D. Ortiz-Barrientos, E. J. Baack and L. H. Rieseberg, 2012 Reconciling Extremely Strong Barriers with High Levels of Gene Exchange in Annual Sunflowers. Evolution 66: 1459-1473.
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David, G. K., C. H. Condon, C. L. Bywater, D. Ortiz-Barrientos and R. S. Wilson, 2011 Receivers Limit the Prevalence of Deception in Humans: Evidence from Diving Behaviour in Soccer Players. Plos One 6.
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David, G. K., R. S. Wilson and D. Ortiz-Barrientos, 2011 Diving in soccer: When does it pay to be dishonest? Integrative and Comparative Biology 51: E30-E30.
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Cameron, S. F., D. Ortiz-Barrientos and R. W. Wilson, 2011 Sexual dimorphism of morphology and functional traits of the introduced Asian house gecko (Hemidactylus frenatus) across a latitudinal cline. Integrative and Comparative Biology 51: E20-E20.
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Prentis, P. J., M. Woolfit, S. R. Thomas-Hall, D. Ortiz-Barrientos, A. Pavasovic et al., 2010 Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant. Annals of Botany 106: 1009-1017.
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David, G., D. Ortiz-Barrientos, M. Smith and R. Wilson, 2010 I can score more than you! Investigating the importance of skill on whole organism performance in a complex environment. Integrative and Comparative Biology 50: E39-E39.
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Nosil, P., D. J. Funk and D. Ortiz-Barrientos, 2009 Divergent selection and heterogeneous genomic divergence. Molecular Ecology 18: 375-402.
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Ortiz-Barrientos, D., A. Grealy and P. Nosil, 2009 The Genetics and Ecology of Reinforcement Implications for the Evolution of Prezygotic Isolation in Sympatry and Beyond. Year in Evolutionary Biology 2009 1168: 156-182.
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Sambatti, J. B. M., D. Ortiz-Barrientos, E. J. Baack and L. H. Rieseberg, 2008 Ecological selection maintains cytonuclear incompatibilities in hybridizing sunflowers. Ecology Letters 11: 1082-1091.
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Ortiz-Barrientos, D., and N. C. Kane, 2007 Meeting review: American genetics association symposium on the genetics of speciation. Molecular Ecology 16: 2852-2854.
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Etges, W. J., C. C. de Oliveira, E. Gragg, D. Ortíz-Barrientos, M. A. F. Noor et al., 2007 Genetics of incipient speciation in Male courtship song, mating success, and genotype x environment interactions. Evolution 61: 1106-1119.
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Ortíz-Barrientos, D., B. A. Counterman and M. A. F. Noor, 2007 Gene expression divergence and the origin of hybrid dysfunctions. Genetica 129: 71-81.
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Ortiz-Barrientos, D., and L. H. Rieseberg, 2006 Speciation - Splitting when together. Heredity 97: 2-3.
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Noor, M. A. F., and D. Ortíz-Barrientos, 2006 Simulating natural conditions in the laboratory:: A re-examination of sexual isolation between sympatric and allopatric populations in Drosophila pseudoobscura. Behavior Genetics 36: 322-327.
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Ortiz-Barrientos, D., S. C. Audrey and M. A. F. Noor, 2006 A recombinational portrait of the Drosophila pseudooscura genome. Genetics Research 87: 23-31.
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Ortíz-Barrientos, D., and M. A. F. Noor, 2005 Evidence for a one-allele assortative mating locus. Science 310: 1467-1467.
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Richards, S., Y. Liu, B. R. Bettencourt, P. Hradecky, S. Letovsky et al., 2005 Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution. Genome Research 15: 1-18.
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Ortiz-Barrientos, D., B. A. Counterman and M. A. F. Noor, 2004 The genetics of speciation by reinforcement. Plos Biology 2: 2256-2263.
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Counterman, B. A., D. Ortíz-Barrientos and M. A. F. Noor, 2004 Using comparative genomic data to test for fast-x evolution. Evolution 58: 656-660.
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Ortíz-Barrientos, D., J. Reiland, J. Hey and M. A. F. Noor, 2002 Recombination and the divergence of hybridizing species. Genetica 116: 167-178.
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Mesa, N. R., M. C. Mondragón, I. D. Soto, M. V. Parra, C. Duque et al., 2000 Autosomal, mtDNA, and Y-chromosome diversity in Amerinds:: Pre- and post-Columbian patterns of gene flow in South America. American Journal of Human Genetics 67: 1277-1286.
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Carvajal-Carmona, L. G., I. D. Soto, N. Pineda, D. Ortíz-Barrientos, C. Duque et al., 2000 Strong Amerind/white sex bias and a possible sephardic contribution among the founders of a population in northwest Colombia. American Journal of Human Genetics 67: 1287-1295.
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Ospina-Duque, J., C. Duque, L. Carvajal-Carmona, D. Ortiz-Barrientos, I. Soto et al., 2000 An association study of bipolar mood disorder (type I) with the 5-HTTLPR serotonin transporter polymorphism in a human population isolate from Colombia. Neuroscience Letters 292: 199-202.
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Ospina-Duque, J., C. Duque, L. Carvajal-Carmona, D. Ortiz-Barrientos, I. Soto et al., 2000 Lack of association between a serotonin transporter promoter polymorphism and bipolar disorder in Antioquia, Colombia. American Journal of Human Genetics 67: 339-339.
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Carvajal-Carmona, L. G., J. Ospina-Duque, J. Calle, C. Lopez, L. Ochoa et al., 2000 A search for genetic loci involved in predisposition to bipolar mood disorder in the population of Antioquia, Colombia. American Journal of Human Genetics 67: 309-309.
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Mesa, N., M. C. Mondragon, I. D. Soto, M. V. Parra, C. Duque et al., 2000 A comparison of autosomal, mtDNA and Y-chromosome diversity in Native South Americans. American Journal of Human Genetics 67: 230-230.
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Torres, M. M., D. Ortiz-Barrientos, I. D. Soto, L. G. Carvajal, C. Duque et al., 2000 mtDNA diversity of Colombian Amerind populations. American Journal of Human Genetics 67: 216-216.
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Ospina-Duque, J., L. Carvajal-Carmona, J. Calle, C. López, L. Ochoa et al., 2000 A search for genetic loci involved in predisposition to bipolar mood disorder in the population of Antioquia, Colombia. American Journal of Medical Genetics 96: 507-507.
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Ospina-Duque, J., C. Duque, L. Carvajal-Carmona, M. Cuartas, D. Ortiz-Barrientos et al., 2000 Lack of association between a serotonin transporter promoter polymorphism and BP1 in Antioquia, Colombia. American Journal of Medical Genetics 96: 490-491.
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Ruiz-Linares, A., D. Ortíz-Barrientos, M. Figueroa, N. Mesa, J. G. Múnera et al., 1999 Microsatellites provide evidence for Y chromosome diversity among the founders of the New World. Proceedings of the National Academy of Sciences of the United States of America 96: 6312-6317.